T1-weighted Conformation
- class qsiprep.interfaces.images.Conform(from_file=None, resource_monitor=None, **inputs)[source]
Bases:
SimpleInterface
Conform a series of T1w images to enable merging.
Performs two basic functions:
Orient to LPS (right-left, anterior-posterior, inferior-superior)
Resample to target zooms (voxel sizes) and shape (number of voxels)
- Mandatory Inputs:
in_file (a pathlike object or string representing a file) – Input image.
- Optional Inputs:
deoblique_header (a boolean)
target_shape (a tuple of the form: (an integer, an integer, an integer)) – Target shape information.
target_zooms (a tuple of the form: (a float, a float, a float)) – Target zoom information.
- Outputs:
out_file (a pathlike object or string representing an existing file) – Conformed image.
transform (a pathlike object or string representing an existing file) – Conformation transform.