qsiprep.utils.testing module
Class and utilities for testing the workflows module
- class qsiprep.utils.testing.TestWorkflow(methodName='runTest')[source]
Bases:
TestCaseSubclass for test within the workflow module. invoke tests with ``python -m unittest discover test
- assertIsAlmostExpectedWorkflow(expected_name, expected_interfaces, expected_inputs, expected_outputs, actual)[source]
somewhat hacky way to confirm workflows are as expected, but with low confidence
- assert_circular(workflow, circular_connections)[source]
check key paths in workflow by specifying some connections that should induce circular paths, which trips a NetworkX error. circular_connections is a list of tuples:
[(‘from_node_name’, ‘to_node_name’, (‘from_node.output_field’,’to_node.input_field’))]
- assert_inputs_set(workflow, additional_inputs={})[source]
Check that all mandatory inputs of nodes in the workflow (at the first level) are already set. Additionally, check that inputs in additional_inputs are set. An input is “set” if it is
a) defined explicitly (e.g. in the Interface declaration) OR b) connected to another node’s output (e.g. using the workflow.connect method)
- additional_inputs is a dict:
{‘node_name’: [‘mandatory’, ‘input’, ‘fields’]}